Mar-20-2018, 04:08 PM
Hi,
I am new to Python.
I used python2.7 to install biom-format package. The scripts and results are shown below. It is very grateful if you have any idea and suggestion.Thank you very much.
start
------------------
C:\Python27\Scripts>pip install C:\Users\xunwe\Downloads\biom-format-2.1.4.tar.gz
Processing c:\users\xunwe\downloads\biom-format-2.1.4.tar.gz
Requirement already satisfied: numpy>=1.3.0 in c:\python27\lib\site-packages (from biom-format==2.1.4)
Requirement already satisfied: pyqi==0.3.2 in c:\python27\lib\site-packages (from biom-format==2.1.4)
Requirement already satisfied: scipy>=0.13.0 in c:\python27\lib\site-packages (from biom-format==2.1.4)
Installing collected packages: biom-format
Running setup.py install for biom-format ... error
Complete output from command c:\python27\python.exe -u -c "import setuptools, tokenize;__file__='c:\\users\\xunwe\\appdata\\local\\temp\\pip-avam5i-build\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record c:\users\xunwe\appdata\local\temp\pip-uxmtbf-record\install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
creating build
creating build\lib.win-amd64-2.7
creating build\lib.win-amd64-2.7\biom
copying biom\err.py -> build\lib.win-amd64-2.7\biom
copying biom\exception.py -> build\lib.win-amd64-2.7\biom
copying biom\parse.py -> build\lib.win-amd64-2.7\biom
copying biom\table.py -> build\lib.win-amd64-2.7\biom
copying biom\util.py -> build\lib.win-amd64-2.7\biom
copying biom\__init__.py -> build\lib.win-amd64-2.7\biom
creating build\lib.win-amd64-2.7\biom\commands
copying biom/commands\installation_informer.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\metadata_adder.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\table_converter.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\table_normalizer.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\table_subsetter.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\table_summarizer.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\table_validator.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\__init__.py -> build\lib.win-amd64-2.7\biom/commands
creating build\lib.win-amd64-2.7\biom\interfaces
copying biom/interfaces\__init__.py -> build\lib.win-amd64-2.7\biom/interfaces
creating build\lib.win-amd64-2.7\biom\interfaces\optparse
copying biom/interfaces/optparse\input_handler.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse
copying biom/interfaces/optparse\output_handler.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse
copying biom/interfaces/optparse\__init__.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse
creating build\lib.win-amd64-2.7\biom\interfaces\optparse\config
copying biom/interfaces/optparse/config\add_metadata.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\convert.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\normalize_table.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\show_install_info.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\subset_table.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\summarize_table.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\validate_table.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\__init__.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
creating build\lib.win-amd64-2.7\biom\interfaces\html
copying biom/interfaces/html\input_handler.py -> build\lib.win-amd64-2.7\biom/interfaces/html
copying biom/interfaces/html\output_handler.py -> build\lib.win-amd64-2.7\biom/interfaces/html
copying biom/interfaces/html\__init__.py -> build\lib.win-amd64-2.7\biom/interfaces/html
creating build\lib.win-amd64-2.7\biom\interfaces\html\config
copying biom/interfaces/html/config\add_metadata.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
copying biom/interfaces/html/config\convert.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
copying biom/interfaces/html/config\normalize_table.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
copying biom/interfaces/html/config\show_install_info.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
copying biom/interfaces/html/config\summarize_table.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
copying biom/interfaces/html/config\validate_table.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
copying biom/interfaces/html/config\__init__.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
running build_ext
building 'biom._filter' extension
error: INCLUDE environment variable is empty
----------------------------------------
Command "c:\python27\python.exe -u -c "import setuptools, tokenize;__file__='c:\\users\\xunwe\\appdata\\local\\temp\\pip-avam5i-build\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record c:\users\xunwe\appdata\local\temp\pip-uxmtbf-record\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in c:\users\xunwe\appdata\local\temp\pip-avam5i-build\
---------------------
end
Thank you!
I am new to Python.
I used python2.7 to install biom-format package. The scripts and results are shown below. It is very grateful if you have any idea and suggestion.Thank you very much.
start
------------------
C:\Python27\Scripts>pip install C:\Users\xunwe\Downloads\biom-format-2.1.4.tar.gz
Processing c:\users\xunwe\downloads\biom-format-2.1.4.tar.gz
Requirement already satisfied: numpy>=1.3.0 in c:\python27\lib\site-packages (from biom-format==2.1.4)
Requirement already satisfied: pyqi==0.3.2 in c:\python27\lib\site-packages (from biom-format==2.1.4)
Requirement already satisfied: scipy>=0.13.0 in c:\python27\lib\site-packages (from biom-format==2.1.4)
Installing collected packages: biom-format
Running setup.py install for biom-format ... error
Complete output from command c:\python27\python.exe -u -c "import setuptools, tokenize;__file__='c:\\users\\xunwe\\appdata\\local\\temp\\pip-avam5i-build\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record c:\users\xunwe\appdata\local\temp\pip-uxmtbf-record\install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
creating build
creating build\lib.win-amd64-2.7
creating build\lib.win-amd64-2.7\biom
copying biom\err.py -> build\lib.win-amd64-2.7\biom
copying biom\exception.py -> build\lib.win-amd64-2.7\biom
copying biom\parse.py -> build\lib.win-amd64-2.7\biom
copying biom\table.py -> build\lib.win-amd64-2.7\biom
copying biom\util.py -> build\lib.win-amd64-2.7\biom
copying biom\__init__.py -> build\lib.win-amd64-2.7\biom
creating build\lib.win-amd64-2.7\biom\commands
copying biom/commands\installation_informer.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\metadata_adder.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\table_converter.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\table_normalizer.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\table_subsetter.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\table_summarizer.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\table_validator.py -> build\lib.win-amd64-2.7\biom/commands
copying biom/commands\__init__.py -> build\lib.win-amd64-2.7\biom/commands
creating build\lib.win-amd64-2.7\biom\interfaces
copying biom/interfaces\__init__.py -> build\lib.win-amd64-2.7\biom/interfaces
creating build\lib.win-amd64-2.7\biom\interfaces\optparse
copying biom/interfaces/optparse\input_handler.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse
copying biom/interfaces/optparse\output_handler.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse
copying biom/interfaces/optparse\__init__.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse
creating build\lib.win-amd64-2.7\biom\interfaces\optparse\config
copying biom/interfaces/optparse/config\add_metadata.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\convert.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\normalize_table.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\show_install_info.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\subset_table.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\summarize_table.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\validate_table.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
copying biom/interfaces/optparse/config\__init__.py -> build\lib.win-amd64-2.7\biom/interfaces/optparse/config
creating build\lib.win-amd64-2.7\biom\interfaces\html
copying biom/interfaces/html\input_handler.py -> build\lib.win-amd64-2.7\biom/interfaces/html
copying biom/interfaces/html\output_handler.py -> build\lib.win-amd64-2.7\biom/interfaces/html
copying biom/interfaces/html\__init__.py -> build\lib.win-amd64-2.7\biom/interfaces/html
creating build\lib.win-amd64-2.7\biom\interfaces\html\config
copying biom/interfaces/html/config\add_metadata.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
copying biom/interfaces/html/config\convert.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
copying biom/interfaces/html/config\normalize_table.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
copying biom/interfaces/html/config\show_install_info.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
copying biom/interfaces/html/config\summarize_table.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
copying biom/interfaces/html/config\validate_table.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
copying biom/interfaces/html/config\__init__.py -> build\lib.win-amd64-2.7\biom/interfaces/html/config
running build_ext
building 'biom._filter' extension
error: INCLUDE environment variable is empty
----------------------------------------
Command "c:\python27\python.exe -u -c "import setuptools, tokenize;__file__='c:\\users\\xunwe\\appdata\\local\\temp\\pip-avam5i-build\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record c:\users\xunwe\appdata\local\temp\pip-uxmtbf-record\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in c:\users\xunwe\appdata\local\temp\pip-avam5i-build\
---------------------
end
Thank you!