I am having horrible problems with using Python on my Windows machine. I want to try scispacy out and I cannot get it to install. I am wondering if there is a better development environment that my desktop. I am put the code through the paces and figure out if spacy can meet my ML needs for medical record review and summarization. Is there a better path I could be on?
(May-03-2023, 02:28 AM)standenman Wrote: [ -> ]I want to try scispacy out and I cannot get it to install.
The problem is
NMSLIB it need compiler for newer version on windows.
Can use
wheel then need to use Python 3.8,make a virtual environment 3.8 then do this.
pip install nmslib-2.1.1-cp38-cp38-win_amd64.whl
pip install scispacy
scispacy is a side project of
spaCy and that is dos not have
conda install(would have fixed complier problems) and use NMSLIB make this problem on Windows.
Thanks for your response. In my virtual environment, I get this error:
ERROR: nmslib-2.1.1-cp38-cp38-win_amd64.whl is not a supported wheel on this platform.
(May-04-2023, 06:37 PM)standenman Wrote: [ -> ]Thanks for your response. In my virtual environment, I get this error:
ERROR: nmslib-2.1.1-cp38-cp38-win_amd64.whl is not a supported wheel on this platform.
You most use Python 3.8,and not Python 3.11 as you showed in a other Thread.
Link 3.8 use
Windows installer (64-bit) do not add to Path.
Then in root folder where you have installed.
# Testet that it point to 3.8
C:\Python38
λ python -V
Python 3.8.9
# Make enviroment
C:\Python38
λ python -m venv sci_env
# cd in
C:\Python38
λ cd sci_env\
# Activate
C:\Python38\sci_env
λ C:\Python38\sci_env\Scripts\activate.bat
# See that it point to sci_env folder
(sci_env) C:\Python38\sci_env
λ pip -V
pip 20.2.3 from c:\python38\sci_env\lib\site-packages\pip (python 3.8)
# List file use <dir > in cmd
(sci_env) C:\Python38\sci_env
λ ls
Include/ Lib/ Scripts/ nmslib-2.1.1-cp38-cp38-win_amd64.whl pyvenv.cfg
# Install wheel
(sci_env) C:\Python38\sci_env
λ pip install nmslib-2.1.1-cp38-cp38-win_amd64.whl
Processing c:\python38\sci_env\nmslib-2.1.1-cp38-cp38-win_amd64.whl
.....
# Install scispacy
(sci_env) C:\Python38\sci_env
λ pip install scispacy
Collecting scispacy
.....
# Test that it work
(sci_env) C:\Python38\sci_env
λ python
Python 3.8.9 (tags/v3.8.9:a743f81, Apr 6 2021, 14:02:34) [MSC v.1928 64 bit (AMD64)] on win32
Type "help", "copyright", "credits" or "license" for more information.
>>> import scispacy
>>> import spacy
>>>
>>> scispacy.__version__
'0.5.2'
>>> exit()