Using Python to read and analyze flow cytometry data files - Printable Version +- Python Forum (https://python-forum.io) +-- Forum: General (https://python-forum.io/forum-1.html) +--- Forum: News and Discussions (https://python-forum.io/forum-31.html) +--- Thread: Using Python to read and analyze flow cytometry data files (/thread-10810.html) |
Using Python to read and analyze flow cytometry data files - dtm04547 - Jun-07-2018 Has anyone ever used Python to read and analyze flow cytometry data files? If so, would you be willing to share the program or script? If not, it might be an interesting project for a student. The file data structure is standardized, and descriptions of the data file standard are readily available. Thanks...dtm, email: [email protected] RE: Using Python to read and analyze flow cytometry data files - buran - Jun-07-2018 there are plenty of packages available https://pypi.org/search/?q=Flow+Cytometry RE: Using Python to read and analyze flow cytometry data files - whitews - Feb-03-2019 I maintain several Python libraries for interacting with flow cytometry data (FCS files):
FlowKit is the most recent addition, and probably the most useful. All of these are based off of the original FCM library. RE: Using Python to read and analyze flow cytometry data files - Shwager - Feb-05-2019 Honestly, I haven't even heard of it, but this is awesome! |