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+--- Thread: Error With Reading Files In Directory And Calculating Values (/thread-24461.html)
Error With Reading Files In Directory And Calculating Values - chascp - Feb-15-2020
I'm trying to run the following code which carries out some calculations on files I have data for with functions for CentreOfMass and SED.
directory = ["./nrl169","./nrl177"]
frame = list()
J = 1
sed = list()
for dir in directory:
for filename in os.listdir(dir):
pathname = os.path.join("directory", filename)
if filename.endswith(".dump"):
f = open(pathname, 'r')
text = f.read()
for line in f:
if J>1:
frame = np.array(frame)
COM = CentreOfMass(frame, N)
print(COM)
sed.append(SED(COM))
frame = list()
J = J + 1
continue
else:
continue
f.close()
plt.hist(sed,bins=25,histype="step",density=True)
plt.show()However, when I run this I get the following error:Traceback (most recent call last):
File "SED.py", line 79, in <module>
f = open(filename, 'r')
FileNotFoundError: [Errno 2] No such file or directory: 'equil_T9.dump'
To explain clearly what I want to do - I am looking to calculated the SED function I have for each of the files I have contained the the two directories listed above. I then want to plot a histogram of these values. Can anyone help me with the error i'm getting and tell me if i'm on the right track?
RE: Error With Reading Files In Directory And Calculating Values - Gribouillis - Feb-15-2020
you probably mean
pathname = os.path.join(dir, filename)
RE: Error With Reading Files In Directory And Calculating Values - chascp - Feb-15-2020
(Feb-15-2020, 01:54 PM)Gribouillis Wrote: you probably mean pathname = os.path.join(dir, filename)Thank you I just realised this but now have a second error regarding an array.it reads Traceback (most recent call last):
File "SED.py", line 86, in <module>
COM = CentreOfMass(frame, N)
File "SED.py", line 17, in CentreOfMass
init=frame[:,-1]
IndexError: too many indices for array
relating to a section of code as follows:
[python]
def CentreOfMass(frame, N):
init=frame[:,-1]
include_types = np.nonzero(init==41)
refor_types=include_types[0][-1]
frame = frame[:refor_types, :]
limit_frame = frame[(frame[:,-1]<41),:]
mol = len(set(limit_frame[:,-3]))
[\python]