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Search Results
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Forum |
Replies |
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Posted
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Thread: Seaborn heatmap intervals
Post: Seaborn heatmap intervals
| Hi all,
Im creating a heatmap using seaborn in python, and I want to set the intervals between the minimum value and maximum value to be 0.05.
right now, my problem is that there are some lines that s... |
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ranbarr |
Homework |
0 |
1,867 |
Aug-09-2021, 11:04 AM |
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Thread: Modifying the axis ticks from words to lines
Post: Modifying the axis ticks from words to lines
| Hi,
Im trying to modify the yticks at my heat map from words to lines.
thats my code:
with open('heat1.csv', 'r', encoding='mac_roman', newline='') as csvfile:
df = pd.read_csv(csvfile, sep=',')
... |
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ranbarr |
Homework |
0 |
1,073 |
Aug-04-2021, 12:34 PM |
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Thread: sum all ints of the same line
Post: RE: sum all ints of the same line
| (Jun-06-2021, 07:52 PM)ranbarr Wrote: hi, Im trying to calculate the mean of a mutation level of chromosomes.
Im caculating each chromosome mutation level with this line:
formula = ((alt_minus+alt_... |
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ranbarr |
Homework |
1 |
1,739 |
Jun-06-2021, 07:54 PM |
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Thread: sum all ints of the same line
Post: sum all ints of the same line
| hi, Im trying to calculate the mean of a mutation level of chromosomes.
Im caculating each chromosome mutation level with this line:
formula = ((alt_minus+alt_plus)/(alt_minus+alt_plus+ref_minus+ref_... |
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ranbarr |
Homework |
1 |
1,739 |
Jun-06-2021, 07:52 PM |
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Thread: Calculate mean only for match strings
Post: RE: Calculate mean only for match strings
| I tried to go to another direction and this is it:
def vcfToDict(file):
if isVCF(file) == True:
chromosome = {}
else:
return ValueError("Invalid VCF Format")
with open(file... |
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ranbarr |
Homework |
1 |
2,670 |
Jun-01-2021, 10:03 AM |
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Thread: Using re to find only uppercase letters
Post: RE: Using re to find only uppercase letters
| (May-28-2021, 06:58 PM)nilamo Wrote: Something still seems off, as that regex won't match the string.>>> import re
>>> test = 'ChrX 74226540 T t 50 .... |
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ranbarr |
Homework |
6 |
3,295 |
May-31-2021, 03:19 PM |
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Thread: Calculate mean only for match strings
Post: Calculate mean only for match strings
| Hi,
I have this assignment in which I have a file that contains alot of chromosed that I need to calculate for each one of them the mutation level.
The problem is that each chromosome can appear sever... |
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ranbarr |
Homework |
1 |
2,670 |
May-31-2021, 03:17 PM |
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Thread: Using re to find only uppercase letters
Post: RE: Using re to find only uppercase letters
| (May-27-2021, 09:21 PM)nilamo Wrote: Is there something that isn't shown? This shouldn't have matched: ChrX (your regex only looks for lowercase "chr")
I'm assuming that's the same reason the lower... |
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ranbarr |
Homework |
6 |
3,295 |
May-28-2021, 12:49 PM |
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Thread: Using re to find only uppercase letters
Post: RE: Using re to find only uppercase letters
| (May-27-2021, 06:53 PM)perfringo Wrote: What is exact meaning of 'find a string with the letters ATGC only in uppercase'. Does it mean 'determine whether line contains word constructed only from let... |
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ranbarr |
Homework |
6 |
3,295 |
May-28-2021, 12:48 PM |
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Thread: Using re to find only uppercase letters
Post: Using re to find only uppercase letters
| Hi,
Im trying to solve a problem using re module, and one of the requests is to find a string with the letters ATGC only in uppercase.
this is my code:
def isVCF(file):
num_format = re.compile(r"^... |
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ranbarr |
Homework |
6 |
3,295 |
May-27-2021, 05:01 PM |
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Thread: Using regex for type validation
Post: RE: Using regex for type validation
| (May-22-2021, 07:35 AM)Gribouillis Wrote: You would get a better structured code with a function to handle each line
def is_vcf_line(line):
columns = line.split('\t')
return bool(
re... |
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ranbarr |
Homework |
5 |
2,681 |
May-22-2021, 09:39 AM |
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Thread: Using regex for type validation
Post: RE: Using regex for type validation
| (May-21-2021, 05:50 PM)Gribouillis Wrote: The 4th and 5fth column have indices 3 and 4, we are in Python.
**blush**
Thank you, totally my bad
Now I do get true,
but when I try to check a file that... |
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ranbarr |
Homework |
5 |
2,681 |
May-21-2021, 08:16 PM |
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Thread: Using regex for type validation
Post: Using regex for type validation
| Hi everyone,
I'm stating to learn regex and I'm trying to solve a problem using it.
I need to write a function that gets a file and need to check some columns in the files and see if they stand the re... |
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ranbarr |
Homework |
5 |
2,681 |
May-21-2021, 04:53 PM |
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Thread: Checking if string starts the same but end differently using re module
Post: Checking if string starts the same but end differe...
| Hi!
Im learning the re module and having a difficulties with the writing of it so Ill be happy to have some explanations.
I have a file with a lot of columns, and I try to find if its first column sta... |
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ranbarr |
Homework |
1 |
1,683 |
May-20-2021, 02:21 PM |
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Thread: Finding how many times substring is in a string using re module
Post: RE: Finding how many times substring is in a strin...
| (May-19-2021, 03:29 PM)DPaul Wrote: if you import string and use count, it's a piece of cake. **smile**
Little caveat if the 'i' in "i'm" does - or does not - count for i.
Of course if you want ... |
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ranbarr |
Homework |
4 |
2,958 |
May-20-2021, 02:07 PM |
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Thread: Finding how many times substring is in a string using re module
Post: Finding how many times substring is in a string us...
| Hi all,
Im learning now the re module and I'm trying to use it to find how many times the words "i" and "i'm" in the song Party Rock Anthem.
I changed the song to be in lowercase and wrote this:
i_in_... |
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ranbarr |
Homework |
4 |
2,958 |
May-19-2021, 12:34 PM |
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Thread: Sorting list - Homework assigment
Post: Sorting list - Homework assigment
| Hi everyone,
Im doing an homework assigment and I keep getting False, I finally found the problem which is because the list isnt sort right but I have no clue how to fix that:
the first part was to cr... |
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ranbarr |
Homework |
1 |
2,238 |
May-16-2021, 02:51 PM |
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Thread: Input validation for nested dict and sorting list of tuples
Post: Input validation for nested dict and sorting list ...
| Hi everyone,
First of all I want to say that I really appreciate this forum and Ive learned alot since I joined!
Im trying to write a func that icludes input validation for a nested dict, converting i... |
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ranbarr |
Homework |
3 |
3,910 |
May-13-2021, 03:14 PM |
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Thread: combining dicts into one dict when not all keys are in both dicts
Post: RE: combining dicts into one dict when not all key...
| (May-12-2021, 05:03 PM)BashBedlam Wrote: (May-12-2021, 03:33 PM)ranbarr Wrote: Why are they defined incorrectly?Because...
(May-12-2021, 12:31 PM)ranbarr Wrote: dict1: {'AFG': 'Afghanistan', 'AL... |
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ranbarr |
Homework |
5 |
2,649 |
May-12-2021, 05:29 PM |
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Thread: combining dicts into one dict when not all keys are in both dicts
Post: RE: combining dicts into one dict when not all key...
| (May-12-2021, 02:44 PM)BashBedlam Wrote: Your dictionaries are defined incorrectly but other than that, the code seems to be functioning as expected.
dict1 = {'AFG': 'Afghanistan', 'ALB': 'Albania'... |
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ranbarr |
Homework |
5 |
2,649 |
May-12-2021, 03:33 PM |
