Python Forum
Thread Rating:
  • 0 Vote(s) - 0 Average
  • 1
  • 2
  • 3
  • 4
  • 5
Similarity network
#3
Thanks a lot for the help !

I tried to finish the function, first I tried to print:

def sif(S):
	for key, value in dic().items():
			print(key,value)
It worked well, here is a few lines in the terminal :

CJA_0908 ['YC6258_00210', 'YC6258_00752', 'YC6258_00896', 'YC6258_00996', 'YC6258_01573', 'YC6258_02031', 'YC6258_02324', 'YC6258_03001', 'YC6258_03399', 'YC6258_04343', 'YC6258_04411', 'YC6258_04506', 'YC6258_04610', 'YC6258_04632', 'YC6258_04632', 'YC6258_05081']
YC6258_05655 ['CJA_0941', 'CJA_0017']
CJA_3636 ['YC6258_01391', 'YC6258_03115', 'YC6258_04565']
CJA_2172 ['YC6258_02942', 'YC6258_04456']
CJA_0705 ['YC6258_04451']
CJA_2312 ['YC6258_02700', 'YC6258_04206', 'YC6258_05879']
YC6258_04757 ['CJA_1954', 'CJA_0230', 'CJA_0040']
CJA_1680 ['YC6258_04219']
CJA_0768 ['YC6258_00482', 'YC6258_01334', 'YC6258_01763', 'YC6258_04120']
YC6258_03292 ['CJA_0541', 'CJA_1040', 'CJA_2017', 'CJA_1630']
CJA_2751 ['YC6258_01150', 'YC6258_04413', 'YC6258_04841']

So I tried next to put it in my output.sif with this code :

def sif(S):
	for key, value in dic().items():
			L = value 
			for item in L:
				prot = ""
				prot = prot + item 
			prot = prot +"\n"
			fo.write(key+"<chain>"+prot)
It is a combination of a lot of try but in the end it comes out as a nonsens, here is a few lines:

YC6258_01638<chain>CJA_3820
YC6258_01965<chain>CJA_0747
YC6258_00851<chain>CJA_0422
CJA_0668<chain>YC6258_05031
CJA_1785<chain>YC6258_04983
CJA_0104<chain>YC6258_05903
YC6258_03597<chain>CJA_2152
YC6258_00918<chain>CJA_2555
YC6258_04616<chain>CJA_0025
YC6258_00551<chain>CJA_3159
YC6258_01798<chain>CJA_3676
CJA_1060<chain>YC6258_05567
CJA_2094<chain>YC6258_03387
YC6258_01909<chain>CJA_0667
YC6258_00274<chain>CJA_1830

DO you have an idea ?
Reply


Messages In This Thread
Similarity network - by Absolumentpasadrien - Apr-05-2019, 09:36 AM
RE: Similarity network - by Gribouillis - Apr-05-2019, 09:42 AM
RE: Similarity network - by Absolumentpasadrien - Apr-05-2019, 10:08 AM
RE: Similarity network - by DeaD_EyE - Apr-05-2019, 10:31 AM

Possibly Related Threads…
Thread Author Replies Views Last Post
  Similarity function for couple system sunnydayxo 1 2,149 Apr-16-2021, 07:11 AM
Last Post: MH90000
  How do I improve string similarity in my current code? SUGSKY 3 2,419 May-28-2020, 05:16 AM
Last Post: deanhystad
  fingerprint similarity audio microphone alessandro87gatto 1 2,451 May-03-2019, 01:33 PM
Last Post: alessandro87gatto

Forum Jump:

User Panel Messages

Announcements
Announcement #1 8/1/2020
Announcement #2 8/2/2020
Announcement #3 8/6/2020