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SSL Handshare Errors
#1
Hello everyone!

I am trying to access some DB with requests, and this code worked about a month ago:

print(f"\n[Protein function based on www.uniprot.org DB]:")
protein_db = {}
with open("materials/protein_db.txt", 'r') as f:
    for line in f:
        protein_db[line[-11:-5]] = line.strip()

pattern = re.compile(r'\bP:(.*);')
for protein, url in protein_db.items():
    protein_db = requests.get(url, timeout=20)
    result = pattern.finditer(protein_db.text)
But now fails and shows the following error:

Error:
Traceback (most recent call last): File "/usr/lib/python3/dist-packages/urllib3/contrib/pyopenssl.py", line 453, in wrap_socket cnx.do_handshake() File "/home/jurisl/.local/lib/python3.7/site-packages/OpenSSL/SSL.py", line 1915, in do_handshake self._raise_ssl_error(self._ssl, result) File "/home/jurisl/.local/lib/python3.7/site-packages/OpenSSL/SSL.py", line 1647, in _raise_ssl_error _raise_current_error() File "/home/jurisl/.local/lib/python3.7/site-packages/OpenSSL/_util.py", line 54, in exception_from_error_queue raise exception_type(errors) OpenSSL.SSL.Error: [('SSL routines', 'ssl3_read_bytes', 'sslv3 alert handshake failure')] During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/urllib3/connectionpool.py", line 600, in urlopen chunked=chunked) File "/usr/lib/python3/dist-packages/urllib3/connectionpool.py", line 343, in _make_request self._validate_conn(conn) File "/usr/lib/python3/dist-packages/urllib3/connectionpool.py", line 841, in _validate_conn conn.connect() File "/usr/lib/python3/dist-packages/urllib3/connection.py", line 344, in connect ssl_context=context) File "/usr/lib/python3/dist-packages/urllib3/util/ssl_.py", line 344, in ssl_wrap_socket return context.wrap_socket(sock, server_hostname=server_hostname) File "/usr/lib/python3/dist-packages/urllib3/contrib/pyopenssl.py", line 459, in wrap_socket raise ssl.SSLError('bad handshake: %r' % e) ssl.SSLError: ("bad handshake: Error([('SSL routines', 'ssl3_read_bytes', 'sslv3 alert handshake failure')])",) During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/requests/adapters.py", line 449, in send timeout=timeout File "/usr/lib/python3/dist-packages/urllib3/connectionpool.py", line 638, in urlopen _stacktrace=sys.exc_info()[2]) File "/usr/lib/python3/dist-packages/urllib3/util/retry.py", line 398, in increment raise MaxRetryError(_pool, url, error or ResponseError(cause)) urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='www.uniprot.org', port=443): Max retries exceeded with url: /uniprot/B5ZC00.txt (Caused by SSLError(SSLError("bad handshake: Error([('SSL routines', 'ssl3_read_bytes', 'sslv3 alert handshake failure')])"))) During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/media/Work/Work/Rosalind/bio_armory.py", line 23, in <module> protein_db = requests.get(url, timeout=20) File "/usr/lib/python3/dist-packages/requests/api.py", line 75, in get return request('get', url, params=params, **kwargs) File "/usr/lib/python3/dist-packages/requests/api.py", line 60, in request return session.request(method=method, url=url, **kwargs) File "/usr/lib/python3/dist-packages/requests/sessions.py", line 533, in request resp = self.send(prep, **send_kwargs) File "/usr/lib/python3/dist-packages/requests/sessions.py", line 646, in send r = adapter.send(request, **kwargs) File "/usr/lib/python3/dist-packages/requests/adapters.py", line 514, in send raise SSLError(e, request=request) requests.exceptions.SSLError: HTTPSConnectionPool(host='www.uniprot.org', port=443): Max retries exceeded with url: /uniprot/B5ZC00.txt (Caused by SSLError(SSLError("bad handshake: Error([('SSL routines', 'ssl3_read_bytes', 'sslv3 alert handshake failure')])")))
I found that I needed the following libs, pip-installed:
pyOpenSSL
ndg-httpsclient
pyasn1

Installing/re-installing them did not solve the issue.
Any ideas/suggestions ?

Regards.
Reply


Messages In This Thread
SSL Handshare Errors - by RebelCoder - Apr-07-2019, 01:27 AM
RE: SSL Handshare Errors - by kritesh - May-11-2019, 10:36 AM
RE: SSL Handshare Errors - by DeaD_EyE - May-11-2019, 11:25 AM

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