program automatization

[Prabakaran141]

Hi

In your case replace the variable file instead of string 'file'.

import os
import subprocess
import sys
for file in os.listdir('.'):
    if file.endswith('pdb'):
        cmd = '/usr/share/apps/flexaid_temporal/Process_Ligand -f ' + file
        p = subprocess.Popen(cmd, shell=True, stderr=subprocess.PIPE)