cobrapy

[deepa]

Hello Everyone,

I am attempting to install cobra 0.6.1 using pip in python 3.4(32-bit).
I am not able to find the 32-bit cobra 0.6.1 installation file.

Could someone provide me a link to the installation file ?

I would be grateful for any help you can offer.

Thanks

[sparkz_alot]

To install the latest version (0.8.1) simply type pip install cobra , if you want all optional packages as well, type pip install cobra[all] . You can find additional information and links on their PyPi page cobrapy.

If, for some reason, you absolutely need to have to the old version, you might contact the developers and see if they have an old copy.  You could also take the new version, remove any new features and reintroduce any bugs that were fixed.

[deepa]

Thanks a lot for your help.
pip install cobra[all] shows an error.
Error:
Command "python setup.py egg_info" failed with error code 1 in C:\Users\DEEPA\AppData\Local\Temp\pip-build-4rm1wkub\pymatbridge\

To be more specific on my problem,I am trying to install sbmlutils package which requires cobrapy 0.6.1
using pip install sbmlutils gives an error.

Error:
Collecting cobra>=0.6.1 (from sbmlutils)
Could not find a version that satisfies the requirement cobra>=0.6.1 (from sbmlutils) (from versions: 0.2.0, 0.2.1, 0.3.0b1, 0.3.0b2, 0.3.0b3, 0.3.0b4, 0.3.0, 0.3.1, 0.3.2, 0.4.0a1, 0.4.0a2, 0.4.0a3, 0.4.0a4, 0.4.0b1, 0.4.0b2, 0.4.0b3, 0.4.0b4, 0.4.0b6, 0.4.0b7, 0.4.0, 0.4.1, 0.4.2b1, 0.4.2b2, 0.5.0b2, 0.5.1b1, 0.5.1b1.post14, 0.5.1b2, 0.5.1b3, 0.5.2b3, 0.5.2, 0.5.3, 0.5.3.post3, 0.5.4, 0.5.6b1, 0.5.6b2, 0.5.6, 0.5.7, 0.5.8, 0.5.9b1, 0.5.9, 0.5.10, 0.5.11)
No matching distribution found for cobra>=0.6.1 (from sbmlutils)

[snippsat]

Test in virtual environment with cobra all(which is about 20 packages).
You should use pip version 9.0.1

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(cobra) E:\1py_div\cobra λ pip -V pip 9.0.1 from e:\1py_div\cobra\lib\site-packages (python 3.6)

Need to first install pip install pyzmq
From Gohlke Scipy wheel.
The run:

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# install pyzmq (cobra) E:\1py_div\cobra λ pip install pyzmq Collecting pyzmq   Downloading pyzmq-16.0.2-cp36-cp36m-win32.whl (790kB)     100% |████████████████████████████████| 798kB 973kB/s Installing collected packages: pyzmq Successfully installed pyzmq-16.0.2   # Install Scipy wheel (cobra) E:\1py_div\cobra λ pip install scipy-0.19.1-cp36-cp36m-win32.whl Processing e:\1py_div\cobra\scipy-0.19.1-cp36-cp36m-win32.whl Collecting numpy>=1.8.2 (from scipy==0.19.1)   Using cached numpy-1.13.1-cp36-none-win32.whl Installing collected packages: numpy, scipy Successfully installed numpy-1.13.1 scipy-0.19.1   # Cobra all (cobra) E:\1py_div\cobra λ pip install cobra[all] Requirement already satisfied: cobra[all] in e:\1py_div\cobra\lib\site-packages Requirement already satisfied: six in e:\1py_div\cobra\lib\site-packages (from cobra[all]) Requirement already satisfied: numpy>=1.6; extra == "all" in e:\1py_div\cobra\lib\site-packages (from cobra[all]) Collecting pytest-benchmark; extra == "all" (from cobra[all])   Downloading pytest_benchmark-3.1.1-py2.py3-none-any.whl (52kB)     100% |████████████████████████████████| 61kB 498kB/s Collecting pymatbridge; extra == "all" (from cobra[all])   Using cached pymatbridge-0.5.2.tar.gz Collecting lxml; extra == "all" (from cobra[all])   Using cached lxml-3.8.0-cp36-cp36m-win32.whl Collecting palettable; extra == "all" (from cobra[all])   Using cached palettable-3.0.0-py2.py3-none-any.whl Collecting pandas>=0.17.0; extra == "all" (from cobra[all])   Downloading pandas-0.20.3-cp36-cp36m-win32.whl (7.5MB)     100% |████████████████████████████████| 7.5MB 165kB/s Collecting matplotlib; extra == "all" (from cobra[all])   Using cached matplotlib-2.0.2-cp36-cp36m-win32.whl Requirement already satisfied: scipy>=0.11.0; extra == "all" in e:\1py_div\cobra\lib\site-packages (from cobra[all]) Collecting pytest; extra == "all" (from cobra[all])   Using cached pytest-3.2.0-py2.py3-none-any.whl Collecting tabulate; extra == "all" (from cobra[all])   Using cached tabulate-0.7.7-py2.py3-none-any.whl Collecting Cython>=0.21; extra == "all" (from cobra[all])   Using cached Cython-0.26-cp36-none-win32.whl Collecting python-libsbml; extra == "all" (from cobra[all])   Downloading python_libsbml-5.15.0-cp36-cp36m-win32.whl (5.2MB)     100% |████████████████████████████████| 5.2MB 222kB/s Collecting py-cpuinfo (from pytest-benchmark; extra == "all"->cobra[all])   Downloading py-cpuinfo-3.3.0.tar.gz (76kB)     100% |████████████████████████████████| 81kB 2.6MB/s Collecting python-dateutil>=2 (from pandas>=0.17.0; extra == "all"->cobra[all])   Downloading python_dateutil-2.6.1-py2.py3-none-any.whl (194kB)     100% |████████████████████████████████| 194kB 1.9MB/s Collecting pytz>=2011k (from pandas>=0.17.0; extra == "all"->cobra[all])   Downloading pytz-2017.2-py2.py3-none-any.whl (484kB)     100% |████████████████████████████████| 491kB 1.4MB/s Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=1.5.6 (from matplotlib; extra == "all"->cobra[all])   Using cached pyparsing-2.2.0-py2.py3-none-any.whl Collecting cycler>=0.10 (from matplotlib; extra == "all"->cobra[all])   Using cached cycler-0.10.0-py2.py3-none-any.whl Collecting py>=1.4.33 (from pytest; extra == "all"->cobra[all])   Using cached py-1.4.34-py2.py3-none-any.whl Collecting colorama; sys_platform == "win32" (from pytest; extra == "all"->cobra[all])   Using cached colorama-0.3.9-py2.py3-none-any.whl Requirement already satisfied: setuptools in e:\1py_div\cobra\lib\site-packages (from pytest; extra == "all"->cobra[all]) Installing collected packages: py, colorama, pytest, py-cpuinfo, pytest-benchmark, pymatbridge, lxml, palettable, python-dateutil, pytz, pandas, pyparsing, cycler, matplotlib, tabulate, Cython, python-libsbml   Running setup.py install for py-cpuinfo ... done   Running setup.py install for pymatbridge ... done Successfully installed Cython-0.26 colorama-0.3.9 cycler-0.10.0 lxml-3.8.0 matplotlib-2.0.2 palettable-3.0.0 pandas-0.20.3 py-1.4.34 py-cpuinfo-3.3.0 pymatbridge-0.5.2 pyparsing-2.2.0 pytest-3.2.0 pytest-benchmark-3.1.1 python-dateutil-2.6.1 python-libsbml-5.15.0 pytz-2017.2 tabulate-0.7.7