How can I make a faster search algorithm

Thread Rating:

Thread Modes

How can I make a faster search algorithm

Larz60+
aetate et sapientia
Super Moderators

Posts: 12,052

Threads: 488

Joined: Sep 2016

Reputation: 452

Apr-15-2019, 08:02 AM (This post was last modified: Apr-15-2019, 08:02 AM by Larz60+.)

I'll take a look at speeding this up.
First I need some info:

You have a huge bottleneck at the beginning (lines 13 through 19)
Curious, why change from DNA to 0 & 1? are you trying to count base 'G'?
Could you please explain what the goal is here, I'm having difficulty understanding.
Do you know the ftp site for downloading fasta file (CM000665.fasta)? something like ftp://ftp.ncbi.nih.gov/snp/organisms/hum.../rs_fasta/

Find

Messages In This Thread

RE: How can I make a faster search algorithm - by Larz60+ - Apr-15-2019, 08:02 AM

Possibly Related Threads…
Thread		Author	Replies	Views	Last Post
	Make code run faster: point within polygon lookups	Bennygib	2	513	Apr-19-2025, 09:33 AM Last Post: Larz60+
	How can I make this code more efficient and process faster?	steven_ximen	0	446	Dec-17-2024, 04:27 PM Last Post: steven_ximen
	Basic binary search algorithm - using a while loop	Drone4four	1	2,942	Jan-22-2024, 06:34 PM Last Post: deanhystad
	Writing a Linear Search algorithm - malformed string representation	Drone4four	10	4,522	Jan-10-2024, 08:39 AM Last Post: gulshan212
	go over and search in numpy array faster	caro	7	3,419	Jun-20-2022, 04:54 PM Last Post: deanhystad
	Trying to search and make new column from the keyword.	dgarg	1	2,131	Dec-20-2021, 08:41 PM Last Post: deanhystad
	Search faster?	Pedroski55	1	2,679	Dec-06-2020, 10:03 PM Last Post: Larz60+
	how to make iterative search more efficient	renergy	2	3,014	Jan-03-2020, 03:43 PM Last Post: stullis
	To make an algorithm work faster	pianistseb	3	3,728	Apr-01-2019, 08:42 AM Last Post: Gribouillis
	How can I make this function faster?	Brennan	10	8,330	Jun-29-2018, 08:33 PM Last Post: ichabod801

Users browsing this thread: 1 Guest(s)